computational biology

This book introduces advanced mathematical methods and techniques for analysis and simulation of models in mathematical epidemiology. Chronological age and class-age play an important role in the description of infectious diseases and this text provides the tools for the analysis of this type of partial differential equation models. This book presents general theoretical tools as well as large number of specific examples to guide the reader to develop their own tools that they may then apply to study structured models in mathematical epidemiology. The book will be a valuable addition to the arsenal of all researchers interested in developing theory or studying specific models with age structure.

This book is based on a one semester course that the authors have been teaching for several years, and includes two sets of case studies.The first includes chemostat models, predator-prey interaction, competition among species, the spread of infectious diseases, and oscillations arising from bifurcations. In developing these topics, readers will also be introduced to the basic theory of ordinary differential equations, and how to work with MATLAB without having any prior programming experience. The second set of case studies were adapted from recent and current research papers to the level of the students. Topics have been selected based on public health interest.This includes the risk of atherosclerosis associated with high cholesterol levels, cancer and immune interactions, cancer therapy, and tuberculosis. Readers will experience how mathematical models and their numerical simulations can provide explanations that guide biological and biomedical research. Considered to be the undergraduate companion to the more advanced book 'Mathematical Modeling of Biological Processes' (A. Friedman, C.-Y. Kao, Springer – 2014), this book is geared towards undergraduate students with little background in mathematics and no biological background.

This book provides a brief but accessible introduction to a set of related, mathematical ideas that have proved useful in understanding the brain and behaviour. If you record the eye movements of a group of people watching a riverside scene then some will look at the river, some will look at the barge by the side of the river, some will look at the people on the bridge, and so on, but if a duck takes off then everybody will look at it. How come the brain is so adept at processing such biological objects? In this book it is shown that brains are especially suited to exploiting the geometric properties of such objects. Central to the geometric approach is the concept of a manifold, which extends the idea of a surface to many dimensions.The manifold can be specified by collections of n-dimensional data points or by the paths of a system through state space. Just as tangent planes can be used to analyse the local linear behaviour of points on a surface, so the extension to tangent spaces can be used to investigate the local linear behaviour of manifolds.The majority of the geometric techniques introduced are all about how to do things with tangent spaces. Examples of the geometric approach to neuroscience include the analysis of colour and spatial vision measurements and the control of eye and arm movements. Additional examples are used to extend the applications of the approach and to show that it leads to new techniques for investigating neural systems. An advantage of following a geometric approach is that it is often possible to illustrate the concepts visually and all the descriptions of the examples are complemented by comprehensively captioned diagrams. The book is intended for a reader with an interest in neuroscience who may have been introduced to calculus in the past but is not aware of the many insights obtained by a geometric approach to the brain. Appendices contain brief reviews of the required background knowledge in neuroscience and calculus.